MmuEX6099764 @ mm9
Exon Skipping
Gene
ENSMUSG00000026921 | Egfl7
Description
EGF-like domain 7 [Source:MGI Symbol;Acc:MGI:2449923]
Coordinates
chr2:26444565-26446015:+
Coord C1 exon
chr2:26444565-26444689
Coord A exon
chr2:26444850-26444966
Coord C2 exon
chr2:26445900-26446015
Length
117 bp
Sequences
Splice sites
3' ss Seq
GCTGACCCCATTCCCTGTAGCCG
3' ss Score
5.94
5' ss Seq
CCGGTGAGT
5' ss Score
10.9
Exon sequences
Seq C1 exon
GCCACAAAAAGAAGAAGGCTACCCCACTTACAGATGCAGACCATGTGGGGCTCCGGAGAACTGCTTGTAGCATGGTTTCTAGTGTTGGCAGCAGATGGTACTACTGAGCATGTCTACAGACCCAG
Seq A exon
CCGTAGAGTGTGTACTGTGGGGATTTCCGGAGGTTCCATCTCGGAGACCTTTGTGCAGCGTGTATACCAGCCTTACCTCACCACTTGCGACGGACACAGAGCCTGCAGCACCTACCG
Seq C2 exon
AACCATCTACCGGACTGCCTATCGCCGTAGCCCTGGGGTGACTCCCGCAAGGCCTCGCTATGCTTGCTGCCCTGGTTGGAAGAGGACCAGTGGGCTCCCTGGGGCTTGTGGAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026921-'8-11,'8-10,10-11=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0249512=7kD_coat=PU(62.5=80.6)
A:
PF075468=EMI=PU(55.7=97.5)
C2:
PF075468=EMI=PD(42.9=75.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCACAAAAAGAAGAAGGCTACC
R:
CTCCACAAGCCCCAGGGAG
Band lengths:
238-355
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: