HsaEX6064065 @ hg19
Exon Skipping
Gene
ENSG00000172889 | EGFL7
Description
EGF-like-domain, multiple 7 [Source:HGNC Symbol;Acc:20594]
Coordinates
chr9:139562693-139564173:+
Coord C1 exon
chr9:139562693-139562814
Coord A exon
chr9:139563009-139563125
Coord C2 exon
chr9:139564058-139564173
Length
117 bp
Sequences
Splice sites
3' ss Seq
CCCCCTCTCCACCCCCGCAGCCG
3' ss Score
10.67
5' ss Seq
CCGGTGAGT
5' ss Score
10.9
Exon sequences
Seq C1 exon
GCCACCCAGAGGAGAAGGCCACCCCGCCTGGAGGCACAGGCCATGAGGGGCTCTCAGGAGGTGCTGCTGATGTGGCTTCTGGTGTTGGCAGTGGGCGGCACAGAGCACGCCTACCGGCCCGG
Seq A exon
CCGTAGGGTGTGTGCTGTCCGGGCTCACGGGGACCCTGTCTCCGAGTCGTTCGTGCAGCGTGTGTACCAGCCCTTCCTCACCACCTGCGACGGGCACCGGGCCTGCAGCACCTACCG
Seq C2 exon
AACCATCTATAGGACCGCCTACCGCCGCAGCCCTGGGCTGGCCCCTGCCAGGCCTCGCTACGCGTGCTGCCCCGGCTGGAAGAGGACCAGCGGGCTTCCTGGGGCCTGTGGAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000172889-'10-14,'10-13,11-14=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF075468=EMI=PU(0.1=0.0)
A:
PF075468=EMI=PU(55.7=97.5)
C2:
PF075468=EMI=PD(42.9=75.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCACCCAGAGGAGAAGGCC
R:
CTCCACAGGCCCCAGGAAG
Band lengths:
234-351
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)