GgaEX1024440 @ galGal3
Exon Skipping
Gene
ENSGALG00000009841 | FASTKD1
Description
NA
Coordinates
chr7:20108664-20109989:+
Coord C1 exon
chr7:20108664-20109137
Coord A exon
chr7:20109469-20109537
Coord C2 exon
chr7:20109864-20109989
Length
69 bp
Sequences
Splice sites
3' ss Seq
TGTCTTTGATTTTTCTGAAGGCT
3' ss Score
6.41
5' ss Seq
AAGGCAAGT
5' ss Score
3.24
Exon sequences
Seq C1 exon
TATAGTGACCATACAGGATGAAAAGAAAAGAGGTGCCCATTTTTCAGATGCCCAAGTTTGTTCTGTGAAACAGTGTTTTACTGTGAAAAATGGAAGAATCTTTGTAGACACCTTAAAGGTAGCTGATGGGCTTAGAAAAATGCTTTGTTTGAGGCAAGTTTGCTTGTCTGCACTGAGACGTTACCAAGCCCGAACTCTGAGCAGCGATCTGCTTCTGAGCCAGATAAATAACTGTACCCATGAAGATGAAGTGTTCAGCCTTGTTGGCAGGAACAAGGCCAGGCTTTCTGAAAAACACGTGGGAATTGCATTGAACGTACTATGGCAGTTGCAGAAGAAGAAGCCACTTCTCTTAAGGACTTCTGACTATGTAAGAAATCACTCCCAGTTTCTAACTCTTTGCTTTTTAGCAGAAAACAAAGTAGAACACATGGATAATGAGACAATAGTGGACACTCTGTATAGTGTACTGAG
Seq A exon
GCTCAGTGTGGAAAGCCATGATTCACTGGCAGGAGTGCTCGTTACAGAAGCGTGGAAAAGATTAGAAAG
Seq C2 exon
CCTTAGTTTACCAGCTTTGTCTAAATTTGCACTGTGTTTACACAAGCAGCACAGACATTTTAGTCCCCTAACTGGCAAAATAGCACATCTTGTGGACATGAAACTGGATTCTATACAGGATATAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009841-'1-1,'1-0,2-1=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGTTGCAGAAGAAGAAGCC
R:
AGTGCAAATTTAGACAAAGCTGGT
Band lengths:
183-252
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]