GgaEX1024440 @ galGal4
Exon Skipping
Gene
ENSGALG00000009841 | FASTKD1
Description
FAST kinase domains 1 [Source:HGNC Symbol;Acc:HGNC:26150]
Coordinates
chr7:18144997-18146053:+
Coord C1 exon
chr7:18144997-18145097
Coord A exon
chr7:18145533-18145601
Coord C2 exon
chr7:18145928-18146053
Length
69 bp
Sequences
Splice sites
3' ss Seq
TGTCTTTGATTTTTCTGAAGGCT
3' ss Score
6.41
5' ss Seq
AAGGCAAGT
5' ss Score
3.24
Exon sequences
Seq C1 exon
GGAACAAGGCCAGGCTTTCTGAAAAACACGTGGGAATTGCATTGAACGTACTATGGCAGTTGCAGAAGAAGAAGCCACTTCTCTTAAGGACTTCTGACTAT
Seq A exon
GCTCAGTGTGGAAAGCCATGATTCACTGGCAGGAGTGCTCGTTACAGAAGCGTGGAAAAGATTAGAAAG
Seq C2 exon
CCTTAGTTTACCAGCTTTGTCTAAATTTGCACTGTGTTTACACAAGCAGCACAGACATTTTAGTCCCCTAACTGGCAAAATAGCACATCTTGTGGACATGAAACTGGATTCTATACAGGATATAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009841-'0-1,'0-0,3-1
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAACAAGGCCAGGCTTTCTGA
R:
GGGACTAAAATGTCTGTGCTGCT
Band lengths:
167-236
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]