RnoEX0035007 @ rn6
Exon Skipping
Gene
ENSRNOG00000024335 | Fastkd1
Description
FAST kinase domains 1 [Source:RGD Symbol;Acc:1563531]
Coordinates
chr3:55946592-55951584:-
Coord C1 exon
chr3:55950246-55951584
Coord A exon
chr3:55949786-55949854
Coord C2 exon
chr3:55946592-55946717
Length
69 bp
Sequences
Splice sites
3' ss Seq
TTCCCTTGTTTTTTATTGAGGTT
3' ss Score
0.12
5' ss Seq
AAGGCAAGT
5' ss Score
3.24
Exon sequences
Seq C1 exon
GAACTGCCGAGATGGAAAAAAAACACGTGAATGAAGGCCAGTTTTTATACTGTCACAGCACATCTGACTTCTAGCACAGATGATCTCTCTCTTTTTTAAACCAAAGAAAAATTGTGCTAAGGAAGGAAAAGAAACCTCTATTTTAGAGAACTGTCCGTTATAAACATGTTCCGTCTACGAGGCGTCTCTCTACTCTCTTGGAGAGCGTTTCCGTTCCGCCCCTTCAGTTGTGAGTCATTAATTGTTCAGATGCAGAACTGTGCAGATGAAGAACAAGTGTTTGATCTTATCGAGAGAAATAAGGCCACGCTCTCAGAACAGCAAGTGGGCTGTGCATTTAACGTACTTTGGCAGTTTCAGAAGCAGAAGACCATCTTGGAGAAAAATGTTGAGCGCGTTAGAAACCATCCTCAGTTTCTTAGTCTTTGCAGTGTTACGACAGATCACATCCCAGCAATGAGTGATGTCACCCTGGTGGATGTGTTATACAGCATAAAACA
Seq A exon
GTTTGCAGTTGAATCCCATCACCCACTAATTGAGGCCCTGGTCACAGAAGGGTGGCGAAGACTCGAAAG
Seq C2 exon
GTTCGATATTAATGTGCTGTCAATATTTTCCACTTGCCTGGCCGATCAGCACTTGTATTTTAGTCCATTAATGGGAAAAATAGCTGACATTGTGAATAGGAAACTGGAAGCCATACAGGACTTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000024335-'0-3,'0-1,1-3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAGCGCGTTAGAAACCATCC
R:
ATACAAGTGCTGATCGGCCAG
Band lengths:
169-238
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]