HsaEX0024948 @ hg19
Exon Skipping
Gene
ENSG00000138399 | FASTKD1
Description
FAST kinase domains 1 [Source:HGNC Symbol;Acc:26150]
Coordinates
chr2:170419735-170428678:-
Coord C1 exon
chr2:170428163-170428678
Coord A exon
chr2:170425694-170425762
Coord C2 exon
chr2:170419735-170419860
Length
69 bp
Sequences
Splice sites
3' ss Seq
ATTCTTTCTTTTTTATTAAGGTT
3' ss Score
8.49
5' ss Seq
AAGGCAAGT
5' ss Score
3.24
Exon sequences
Seq C1 exon
GTTTACAGTCATTGTAATGGAAGCAAAATACATGAAGGAAAAACTGTTATTTGTATCCCTGCTTATTGCACCTGACGACTAGTTGCAGATGGTTTTGTTTACCTAAGAAAACTTGTGATATAAATGAAAAAAACACCTGTTTTCCTAGAGTCATTGGTTACAAATATGCTTCGTCTAAGAGCTATTTGTCCATTCTCCTGGAGAGTGTTTCAATTTCGACCCATCAGTTGTGAACCACTAATTATTCAGATGAATAAGTGTACAGATGAGGAGCAAATGTTTGGTTTTATTGAAAGAAACAAAGCCATACTTTCAGAAAAGCAAGTGGGATGTGCATTTGATATGCTTTGGAAGCTTCAAAAGCAGAAGACCAGCCTGTTAAAAAATGCTGAGTATGTCAGAGACCATCCTCAATTTCTTACTCTTCATAATTTAGCTACAAATAAATTCAAATTAATGAATGACGATACCCTGGTGAATGTGTTATACGTCACACAACA
Seq A exon
GTTTGCTGGTGAGGCCCATGACCCGCTAGTTGAAGCACTAGTTACAGAAGCATGGAGAAGGCTAGAAAG
Seq C2 exon
GTTTGATATTAAACTGCTCTCAGAATTTTCCTCTTGCCTAGCAGATCAGCATTTGTATTTTAGTCCATTAATGGGAAAAATAGCTGATATTGTTCATAGGAACTTGGAAACCACACAGGACTTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000138399_MULTIEX2-1/3=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAAGCAGAAGACCAGCCTGTT
R:
AGGCAAGAGGAAAATTCTGAGAGC
Band lengths:
180-249
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)