MmuEX6101959 @ mm10
Exon Skipping
Gene
ENSMUSG00000027086 | Fastkd1
Description
FAST kinase domains 1 [Source:MGI Symbol;Acc:MGI:2444596]
Coordinates
chr2:69708511-69712606:-
Coord C1 exon
chr2:69712127-69712606
Coord A exon
chr2:69711494-69711562
Coord C2 exon
chr2:69708511-69708636
Length
69 bp
Sequences
Splice sites
3' ss Seq
TTTTCCTTGTTTTTATTGAGGTT
3' ss Score
0.87
5' ss Seq
AAGGCAAGT
5' ss Score
3.24
Exon sequences
Seq C1 exon
GCAAATAAAGCACGTGAATGAAAGCCAGATTTTATATTGTCACATTATACCTGACTTCTAGTGTAGATGCTTTTTTTTTTTAACCAAAGAAAAAATTGTGCTAAGGAAAAGAAACCTCTATTTTGGAGCCCCGTCCGTTATAAATATGTTCCGGCTACGAAGCATCTCTTTACTCTCTTGGAGAGCATTTCCGCTCCGCCCCTTCAGTTGTGAGTCATTAATTACTCAGATGCAGAAGTGTACAAACGAAGAACAAGTGTTTGACCTTATTGAGACGAATACGGCAACGCTCTCCGAACAGCAAGTGGGCTGTGCGTTTAATGTACTTTGGCAGTTTCAGAAGCAGAAGACCGTCTTGGAAAAAAACGTTGACCATGTTAGAAACCATCCTCAGTTTCTTACTCTTTGCAGCATTACAACAAATCACATCCCAGCAATGAGTGATGCTACCCTGGTGGATGTGTTATACAGCATAAAGCA
Seq A exon
GTTTGCAGTTGAATCCCATCACCCACTAATCGAAGCACTGGTTACAGAAGCATGGAAAAGACTGGAAAG
Seq C2 exon
GTTCGATACTAATGTGCTGTCCATATTTTCCACTTGCTTGGCCGATCAGCATCTGTATTTCAGTCCATTAATGGGAAAAATAGCTGATATTGTAAATAGGAGACTGGAAACCATCCAGGACTTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000027086-'1-4,'1-2,2-4=AN
Average complexity
A_S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGAAGACCGTCTTGGAAAA
R:
TCGGCCAAGCAAGTGGAAAAT
Band lengths:
183-252
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types