GgaEX1024831 @ galGal3
Exon Skipping
Gene
ENSGALG00000008966 | FBXW5
Description
NA
Coordinates
chr17:902004-906403:+
Coord C1 exon
chr17:902004-902152
Coord A exon
chr17:903492-903978
Coord C2 exon
chr17:906256-906403
Length
487 bp
Sequences
Splice sites
3' ss Seq
TTACTTCTCTTTTCTCCCAGGGC
3' ss Score
10.9
5' ss Seq
TAGGTAAGG
5' ss Score
9.31
Exon sequences
Seq C1 exon
AGAACTTCACACTGCTTTCCAGAGTGAGGAATAAACCTTATGATGTATTTGGCTGTTGGCTGAATGAAACCAACTTAATATCTGGCAATCTGCATCGGATTGGGCGTATAACCTCCTGTTCTGTGCTGTGGCTGAACAACGCTTTCCAG
Seq A exon
GGCATAGAGTCTGAGAATGTGAACGTAGTGAAGAGACTGTTCAAAATCCAGAATCTGAATGCCAGCACTATCCGGACCGTGATGGTGGCTGACTGCAGCCGGTACGATTCCCCAGACCTGCTCCTGGACTACGAGGAGCAGCTGGCTGCCTCTTCCACCTCCACCTGCCCAGTCTTTGATCTCGGCAGTGACAGCGAAGAAGAGGAGTCCAAGCCCAAGCAGACTCCAGAGCCAGCAGTACAGGAAATGCCGGATGATGGGGGTGTGCCAGCAGAGGATGAGCTGCAGCAGTTCTTTGATGATATCATGGGGGGCTGTGTGAGGCCTGCCATGACTGAGGCTGAGCTGGAGAACAAAGTGGCTGAGCTGTTCATACGCAACAGAACTAAACCGCCCGAGGTGAACCTGCTTTCCACGGACAGCAACAGCAAGACAAAATACTTAATTTTCACCACAGGGTGCCTCACCTACTCTCCGCACCAGATAG
Seq C2 exon
GGATTAAAAGGATCCTGCCCCATCAGATGACAACTGCTGGGCCGGTGCTTGGGGAGGAGAGGCGTTCGGATGAGTTCTTTGACTCGCTGGATCACGTCATTGACATCCACGGGCACATAATTGGCATGGGTCTCTCCCCTGACCACCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008966-'7-9,'7-7,10-9=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.270 C2=0.080
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTTCACACTGCTTTCCAGAGT
R:
CGGTGGTCAGGGGAGAGAC
Band lengths:
294-781
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]