HsaEX6064125 @ hg38
Exon Skipping
Gene
ENSG00000159069 | FBXW5
Description
F-box and WD repeat domain containing 5 [Source:HGNC Symbol;Acc:HGNC:13613]
Coordinates
chr9:136941537-136942668:-
Coord C1 exon
chr9:136942547-136942668
Coord A exon
chr9:136942046-136942466
Coord C2 exon
chr9:136941537-136941684
Length
421 bp
Sequences
Splice sites
3' ss Seq
GCACGTGCCCCCGCCCCCAGGAT
3' ss Score
8.66
5' ss Seq
TCGGTACAC
5' ss Score
2.88
Exon sequences
Seq C1 exon
GGAACAAGCCCTATGACGTGTTTGGCTGTTGGCTCACCGAGACCAGCCTCATCTCGGGGAACCTGCACCGCATCGGAGATATCACCTCCTGCTCGGTGCTGTGGCTCAACAATGCCTTCCAG
Seq A exon
GATGTGGAGTCAGAGAACGTCAACGTGGTGAAGCGGCTGTTCAAGATCCAGAACCTCAATGCCAGCACCGTCCGCACGGTGATGGTGGCCGACTGCAGCCGCTTCGACAGCCCTGACCTGCTGCTGGAAGCCGGTGACCCGGCCACGTCCCCCTGCCGCATCTTTGACCTGGGCAGCGACAACGAGGAGGTGGTGGCTGGCCCGGCCCCCGCCCACGCCAAGGAGGGCTTGCGGCACTTTCTGGACCGCGTGCTGGAGGGGCGGGCGCAGCCACAGCTGTCGGAGCGCATGCTAGAGACCAAGGTGGCCGAGCTGCTGGCCCAGGGCCACACCAAGCCACCCGAGCGCAGTGCCACAGGCGCCAAGAGCAAGTACCTCATCTTCACCACTGGCTGCCTCACCTACTCCCCACACCAGATCG
Seq C2 exon
GCATCAAGCAGATCCTGCCACACCAGATGACCACGGCAGGGCCCGTGCTGGGTGAGGGCCGGGGCTCCGATGCCTTCTTCGACGCGCTGGACCACGTCATAGACATACACGGACACATCATCGGCATGGGCCTGTCGCCCGACAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000159069-'9-21,'9-18,11-21
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.174 C2=0.060
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAACAAGCCCTATGACGTGT
R:
GCCGATGATGTGTCCGTGTAT
Band lengths:
247-668
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains