GgaEX1024831 @ galGal4
Exon Skipping
Gene
ENSGALG00000008966 | FBXW5
Description
F-box/WD repeat-containing protein 5 [Source:RefSeq peptide;Acc:NP_001025865]
Coordinates
chr17:521301-525700:+
Coord C1 exon
chr17:521301-521449
Coord A exon
chr17:522789-523275
Coord C2 exon
chr17:525553-525700
Length
487 bp
Sequences
Splice sites
3' ss Seq
TTACTTCTCTTTTCTCCCAGGGC
3' ss Score
10.9
5' ss Seq
TAGGTAAGG
5' ss Score
9.31
Exon sequences
Seq C1 exon
AGAACTTCACACTGCTTTCCAGAGTGAGGAATAAACCTTATGATGTATTTGGCTGTTGGCTGAATGAAACCAACTTAATATCTGGCAATCTGCATCGGATTGGGCGTATAACCTCCTGTTCTGTGCTGTGGCTGAACAACGCTTTCCAG
Seq A exon
GGCATAGAGTCTGAGAATGTGAACGTAGTGAAGAGACTGTTCAAAATCCAGAATCTGAATGCCAGCACTATCCGGACCGTGATGGTGGCTGACTGCAGCCGGTACGATTCCCCAGACCTGCTCCTGGACTACGAGGAGCAGCTGGCTGCCTCTTCCACCTCCACCTGCCCAGTCTTTGATCTCGGCAGTGACAGCGAAGAAGAGGAGTCCAAGCCCAAGCAGACTCCAGAGCCAGCAGTACAGGAAATGCCGGATGATGGGGGTGTGCCAGCAGAGGATGAGCTGCAGCAGTTCTTTGATGATATCATGGGGGGCTGTGTGAGGCCTGCCATGACTGAGGCTGAGCTGGAGAACAAAGTGGCTGAGCTGTTCATACGCAACAGAACTAAACCGCCCGAGGTGAACCTGCTTTCCACGGACAGCAACAGCAAGACAAAATACTTAATTTTCACCACAGGGTGCCTCACCTACTCTCCGCACCAGATAG
Seq C2 exon
GGATTAAAAGGATCCTGCCCCATCAGATGACAACTGCTGGGCCGGTGCTTGGGGAGGAGAGGCGTTCGGATGAGTTCTTTGACTCGCTGGATCACGTCATTGACATCCACGGGCACATAATTGGCATGGGTCTCTCCCCTGACCACCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008966_MULTIEX1-2/3=1-3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.270 C2=0.120
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTTCACACTGCTTTCCAGAGT
R:
CGGTGGTCAGGGGAGAGAC
Band lengths:
294-781
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]