MmuEX6099560 @ mm10
Exon Skipping
Gene
ENSMUSG00000015095 | Fbxw5
Description
F-box and WD-40 domain protein 5 [Source:MGI Symbol;Acc:MGI:1354731]
Coordinates
chr2:25317464-25505471:+
Coord C1 exon
chr2:25317464-25317485
Coord A exon
chr2:25503437-25503641
Coord C2 exon
chr2:25504710-25505471
Length
205 bp
Sequences
Splice sites
3' ss Seq
CACCCAACTGTTATCCACAGGAT
3' ss Score
8.14
5' ss Seq
CAGGTTTGC
5' ss Score
4.86
Exon sequences
Seq C1 exon
ACAACACACACACACACACAAC
Seq A exon
GATGTGGAGTCAGAGAATGTCAACGTGGTAAAGCGGCTCTTTAAGATCCAGAACCTCAATGCCAGCACCATCCGCACAGTGATGGTGGCTGACTGTAGCCGCTTTGATAGCCCGGACCTCCTGCTGGATGCTAGCGACCAGGCTGGGCTCCCCTGCCGAGTCTTTGACCTAGGTGGGGACACTGAAGAAGAGGCCACTGACCCAG
Seq C2 exon
TGGGGCTGAAGATCGGCATGGCTATATCTGGGACCGCCACTACAACATCTGCCTAGCCAAGCTGCGGCATGAGGATGTGGTCAACTCCGTGGCTTTTAGCCCCCAGGAGCAGGAACTCTTGCTGACAGCCAGCGACGATGCCACTATCAAAGCCTGGCGTTCACCACGCATTGTTCGTGTTCTGCAGGCTCCACGCCCTCGCCCCCGCCCTCGCCCCCGCCCCTTCTTCTCCTGGTTTGCCAGCCATAGGCGCTGAAGGCTTCAGTGATTTGAGCCATTGGAACCTACTGGGGAAAATGGTACCCCGTGGTTCTTTATTGCACTGGGGCAGAGTAGCTCATAGCAGCAATGCCTTAGGAGGGGCAGCCTGACCCCAACACACACACACACACACACACACACAAAACCTGCTCACTTAGCCATAAGGCTTAGCACTAGGGTAGCCCTTGTTGGCAGCACCAGATCCCATGCTAGCCTCTTGGCTAGCTTGGGGTACACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000015095_MULTIEX1-5/8=C1-C2
Average complexity
C3*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.108 C2=0.020
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
PF0040027=WD40=WD(100=43.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAACACACACACACACACAAC
R:
TGGCTCAAATCACTGAAGCCT
Band lengths:
299-504
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types