DreEX0032429 @ danRer10
Exon Skipping
Gene
ENSDARG00000099139 | fbxw5
Description
F-box and WD repeat domain containing 5 [Source:ZFIN;Acc:ZDB-GENE-040426-2571]
Coordinates
chr5:53821780-53826314:-
Coord C1 exon
chr5:53826166-53826314
Coord A exon
chr5:53824228-53824527
Coord C2 exon
chr5:53821780-53821963
Length
300 bp
Sequences
Splice sites
3' ss Seq
GTTACCCTTTCCATGTTTAGGGC
3' ss Score
9.94
5' ss Seq
CATGTAAGC
5' ss Score
5.61
Exon sequences
Seq C1 exon
ACAACTACACTCTGCTGTCCCGTGTGAGAAATAAACCCTATGATGTGTTTGGCTGCTGGCTGAATGAGACTCACCTTATTTCTGGTAACCTGCATTGGATTGGCAACATGACTTCCTGCTCGGTGCTCTGGCTCAACAATGCCTTCCAG
Seq A exon
GGCATTGAGTCAGAAAACGTGAATGTGGTAAAGCGTCTCTTTAAAATCCAAAACATAAATGCCAGCACCATCCGCACTGTGATGGTGGCCCACTGCCGTCGACACGACTCCCCTGACCTTCTTTTGGACTATGAAGCTCAGGCCCAGCGGACGCAGCAGCACCAGCCTCTCTTCTTTGATCTGGGAAATACAGACAGTGAAGAGGAGGGTGAAGATGATGCGGAAGAGGAGCGAGGAGAAAAAAGATTAGCAGCACATCTGCCCTCATTGAAACCGTCTGGGCTGCATCATGTTTTACAT
Seq C2 exon
GGTTGTCAGAGCATAGCCACTCGTGAGCGAGAGTTAGAGACGAAGGTGGCCAGGCTGATGGGCAGCAGACGCACCAAAGCTCCTGAACTAAATCTGGTGTCTCCTTCAAATGTTGGAGAAGGAGAGGACATGACCTATCTGCTCTTCACCACTGGCAGCCTCACATATTCCCCTCACCAAATAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000099139_MULTIEX1-4/5=3-5
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.370 C2=0.355
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAACTACACTCTGCTGTCCCG
R:
GGTGAGGGGAATATGTGAGGC
Band lengths:
326-626
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]