GgaEX1031304 @ galGal4
Exon Skipping
Gene
ENSGALG00000011262 | KCNH8
Description
potassium channel, voltage gated eag related subfamily H, member 8 [Source:HGNC Symbol;Acc:HGNC:18864]
Coordinates
chr2:36160872-36179512:+
Coord C1 exon
chr2:36160872-36161086
Coord A exon
chr2:36177409-36177447
Coord C2 exon
chr2:36179160-36179512
Length
39 bp
Sequences
Splice sites
3' ss Seq
TTTTGTTTTTTTTGTTTCAGGTA
3' ss Score
13.01
5' ss Seq
CAGGTATGT
5' ss Score
9.8
Exon sequences
Seq C1 exon
GTAAAGGAGATTTAATTGGAGCAAACCTATCCATTAGGGATCAAGTCATTAAAACAAATGCAGATGTTAAAGCTCTAACTTACTGTGACCTCCAATGCATTATCCTCAAAGGCCTCTTTGAAGTACTTGATCTTTACCCAGAGTATGCTCACAAGTTTGTTGAAGACATACAGCATGATCTCACTTACAATTTAAGAGAAGGCCATGAAAGCGAC
Seq A exon
GTAATATCGAAATTGTCAAACAAGTCTACATTATCTCAG
Seq C2 exon
ACCGAGCTCAAGGGAAATGGAAACATAAAGAAGAAACTTCCTTCAATTGTGGAAGATGAGGAAGATGATGAGGAAGGAGAAGAAGAGAGCAGCACACTTTCACCAATCCATACAAGAAGTACAACTTTCCCTCAGCAGAAGGCTGGAAGCAATAAAAGCCACCTGGGGAGAAACTTGAAACAGTTGGCCTCAGGAACAGTGCCCTTCCATTCACCAATTCGTGCTTGCAGTTCAAACTCCTCAAGAACCAAACATGAAACGGAGCTCCATTACTACTCTAGAAGGAGGGAGAAAAATCTTAAATTACACCTTTCAGCACTGAACTCTGGGGGTCCACCTGACTTGAGCCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011262-'9-11,'9-10,10-11
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.231 C2=0.932
Domain overlap (PFAM):
C1:
PF0002724=cNMP_binding=PD(53.4=65.3)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAGAAGGCCATGAAAGCGAC
R:
TGGTGAAAGTGTGCTGCTCTC
Band lengths:
126-165
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]