BtaEX0018833 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000012798 | KCNH8
Description
potassium channel, voltage gated eag related subfamily H, member 8 [Source:HGNC Symbol;Acc:HGNC:18864]
Coordinates
chr1:138590460-138642312:+
Coord C1 exon
chr1:138590460-138590674
Coord A exon
chr1:138637274-138637312
Coord C2 exon
chr1:138641960-138642312
Length
39 bp
Sequences
Splice sites
3' ss Seq
CTGTCTGTTTCTTCTTTCAGGTG
3' ss Score
14.21
5' ss Seq
CAGGTATGG
5' ss Score
9.99
Exon sequences
Seq C1 exon
GGAAAGGGGATTTAATTGGAGCCAATCTATCAATTAAGGACCAAGTAATCAAGACCAACGCGGATGTGAAGGCGCTAACCTACTGTGATCTCCAGTGTATCATCCTCAAAGGACTCTTTGAAGTTCTGGACCTTTACCCAGAATATGCTCACAAATTTGTGGAAGACATTCAGCATGACCTCACATACAACCTTCGAGAAGGTCACGAGAGTGAT
Seq A exon
GTGATATCAAGATTATCAAACAAATCGACAGTCTCACAG
Seq C2 exon
TTGGAGCCCAAGGGAAATGGCAGCATCAAGAAGAGACTGCCGTCCATCGTGGAAGACGAGGAGGAGGAGGACGAGGGGGAGGAGACAGCCTCCCTGTCCCCCGTCTACACCAGGGGACCCGCCTCTTCTCGCAGCAAGCGGCCTGGAGGCAGTAAGAGCTACCTCGGCTTAAGCCTGAAGCAGCTGGCCTCGGGAACTGTGCCGTTTCACTCACCTATCAGAGTCTCCAGTTCAAACTCCCCCAAAACCAAGCAGGAGACGGATGCCCCAAACTATGGCAAAAGAAAAGAGAAGAACTTGAAATTGCAGCTTTCGACTTTGAACAGAGCTGGACCCCCAGACCTCAGTCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000012798-'16-22,'16-21,18-22
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.538 C2=0.915
Domain overlap (PFAM):
C1:
PF0002724=cNMP_binding=PD(53.4=65.3)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGACATTCAGCATGACCTCACA
R:
GTCCTCCTCCTCCTCGTCTTC
Band lengths:
124-163
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development