DreEX0040906 @ danRer10
Exon Skipping
Gene
ENSDARG00000062640 | kcnh8
Description
potassium voltage-gated channel, subfamily H (eag-related), member 8 [Source:ZFIN;Acc:ZDB-GENE-060503-204]
Coordinates
chr19:21033274-21041668:+
Coord C1 exon
chr19:21033274-21033488
Coord A exon
chr19:21034602-21034640
Coord C2 exon
chr19:21041439-21041668
Length
39 bp
Sequences
Splice sites
3' ss Seq
CTGTATATCTCCTTTTCCAGGTC
3' ss Score
11.44
5' ss Seq
CAGGTGCGT
5' ss Score
9.73
Exon sequences
Seq C1 exon
GTAAAGGTGACCTGATTGGTGCAAACATGTCGGTTGGTGACCGTGTCATAAAGACGAATGCTGATGTGAAGGCGCTAACCTACTGCGACCTACAGTGCATTAATCTGAGGGGTCTGTATGAGGTGCTGGATCTGTATCCTGAATACTCTCACCGGTTTGTGCAGGATATCACACATGACCTCACCTACAACCTGAGAGAGGGCCAAGAGAGCCAT
Seq A exon
GTCATATCCAGGATGTCCAGTAAGTCCATGGACACACAG
Seq C2 exon
ATGGAGGGGAGGGGAAACGGAGATGCGATCCAGTGCTATCCACCAATAGCTGAGCATCACAATGAAGAAGATGACGATGACGACGACGATGAAGATGATCAGATACAGTACCTCAGCGGTGGAGGCAAACAGAAAACACACATGCAGAAAAATGATCACCAAACCAACAAAAAGCTCCACATTCAGCACACCACTGTCACGAAACCTGACCTCGGAAATCTCAGCCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000062640_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.014 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0002724=cNMP_binding=PD(53.4=65.3)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTGAGAGAGGGCCAAGAGAG
R:
TCGTCGTCGTCATCGTCATCT
Band lengths:
114-153
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]