MmuEX1015632 @ mm10
Exon Skipping
Gene
ENSMUSG00000035580 | Kcnh8
Description
potassium voltage-gated channel, subfamily H (eag-related), member 8 [Source:MGI Symbol;Acc:MGI:2445160]
Coordinates
chr17:52905001-52956911:+
Coord C1 exon
chr17:52905001-52905215
Coord A exon
chr17:52950330-52950368
Coord C2 exon
chr17:52956556-52956911
Length
39 bp
Sequences
Splice sites
3' ss Seq
CATTCTGTTTGTTCTTTCAGGTA
3' ss Score
12.41
5' ss Seq
CAGGTATGG
5' ss Score
9.99
Exon sequences
Seq C1 exon
GGAAGGGAGATTTAATTGGAGCAAATTTATCAATTAAAGACCAAGTGATCAAGACCAACGCTGATGTGAAGGCGCTGACCTACTGTGATCTACAGTGCATCATCCTGAAAGGTCTCTTTGAGGTGCTGGGCCTTTACCCAGAGTATGCACACAAATTCGTAGAAGACATCCAGCACGACCTCACATACAACCTTCGAGAAGGTCATGAGAGTGAT
Seq A exon
GTAATATCAAGATTATCGAACAAATCTACAGTCTCACAG
Seq C2 exon
GCAGAGCCCAAGGGGAATGGAAGCATCAACAAGAGACTCCCATCCATTGTGGAAGATGAGGAGGAAGAAGAGGTTGAGGAAGAGGAGACGACCTCCCTTTCTCCTATCTACACAAGGGGATCCTCTGTCTCACATAGCAAAAAGACTGGAAGCAATAAGACCTATCTAGGCTTGAGCTTAAAGCAACTGGCCTCAGGAACGGTACCATTCCACTCACCTATCAGAGTCTCCAGTGCCAACTCCCCTAAAACCAAGCAGGAAGCTGACCCACCTAACCATGGTAGAAAGAAAGAGAAGAACCTGAAAGTGCAGCTTTCCAGCCTGGGTAGTGCTGGAACCCCAGAGCTTAGTCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000035580-'13-16,'13-15,14-16
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.769 C2=0.899
Domain overlap (PFAM):
C1:
PF0002724=cNMP_binding=PD(53.4=65.3)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTGAGGTGCTGGGCCTTTAC
R:
GATGCTTCCATTCCCCTTGGG
Band lengths:
126-165
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types