RnoEX6038443 @ rn6
Exon Skipping
Gene
ENSRNOG00000058626 | Kcnh8
Description
potassium voltage-gated channel subfamily H member 8 [Source:RGD Symbol;Acc:2549]
Coordinates
chr9:3161077-3294641:-
Coord C1 exon
chr9:3294427-3294641
Coord A exon
chr9:3167572-3167610
Coord C2 exon
chr9:3161077-3161432
Length
39 bp
Sequences
Splice sites
3' ss Seq
CATTCTGTTTGTTCTTTCAGGTA
3' ss Score
12.41
5' ss Seq
CAGGTATGG
5' ss Score
9.99
Exon sequences
Seq C1 exon
GGAAGGGGGATTTAATTGGAGCAAATTTATCAATTAAAGACCAAGTGATCAAGACCAACGCTGACGTGAAGGCTCTGACCTACTGTGATCTACAGTGCATCATCCTGAAAGGTCTCTTTGAGGTGCTGGGCCTTTACCCAGAGTACGCACACAAATTCGTAGAAGACATCCAGCACGACCTCACATACAACCTTCGAGAAGGTCATGAGAGTGAT
Seq A exon
GTAATATCAAGATTATCGAACAAATCTACAGTCCCACAG
Seq C2 exon
GCAGAGCCCAAGGGGAATGGAAGCATCAAGAAGAGACTCCCATCCATTGTGGAAGATGAGGAAGAGGAGGAAGTGGAGGAAGAGGAGACCACCTCCCTTTCTCCCATCTACACAAGGGGATCCTCTGTTTCACACAGCAAAAAGACTGGAAGCAGTAAGAGCTATCTAGGTTTGAGCTTAAAGCAACTGGCCTCAGGAACAGTTCCATTCCACTCACCTATCAGAGTCTCCAGTGCCAACTCCCCTAAAACCAAGCAGGAAGCTGACCCACCTAACCATGGCACACGGAAAGAGAAGAATCTGAAAGTTCAGCTCTGCAGCCTGGGTACTGCTGGAACCCCAGAGCTCAGTCCGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000058626-'13-16,'13-15,14-16=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.923 C2=0.807
Domain overlap (PFAM):
C1:
PF0002724=cNMP_binding=PD(53.4=65.3)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCTTTACCCAGAGTACGCAC
R:
GATGCTTCCATTCCCCTTGGG
Band lengths:
113-152
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]