GgaEX1032723 @ galGal3
Exon Skipping
Gene
ENSGALG00000012418 | F1NDY5_CHICK
Description
NA
Coordinates
chr7:34285462-34294162:+
Coord C1 exon
chr7:34285462-34285536
Coord A exon
chr7:34286861-34287007
Coord C2 exon
chr7:34294064-34294162
Length
147 bp
Sequences
Splice sites
3' ss Seq
GTGCTTTAACTTTGTTTTAGGGG
3' ss Score
9.5
5' ss Seq
AAGGTAGGA
5' ss Score
9.45
Exon sequences
Seq C1 exon
TATGCTGTTGAGTCCCAGCTTCGATTTCATGGACTCGATGTGGAGAAAAGCATGCTCATGCTGCGGCCACGGGAG
Seq A exon
GGGGAGGAGACCTTGAGGATTGAAGATATTCTTGCTGTGATTGAGGAGGAAGGGGACTCTATTGCTGTCATTCTGTTCAGTGGGGTGCAGTACTACACGGGCCAGCTGTTTGACATCCCTAGAATAACAAAAGCTGGCCAAAAAAAG
Seq C2 exon
GGTTGCTTTGTTGGATTTGACCTGGCTCATGCTGTTGGGAACGTAGAGCTCTGTTTGCATGACTGGGGAGTGGATTTTGCATGCTGGTGCACCTACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012418-'9-9,'9-6,11-9=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0026614=Aminotran_5=FE(13.4=100)
A:
PF0026614=Aminotran_5=FE(14.5=100)
C2:
PF0026614=Aminotran_5=FE(19.0=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGCTGTTGAGTCCCAGCTTC
R:
GCACCAGCATGCAAAATCCAC
Band lengths:
164-311
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]