RnoEX0047954 @ rn6
Exon Skipping
Gene
ENSRNOG00000029993 | Kynu
Description
kynureninase [Source:RGD Symbol;Acc:71061]
Coordinates
chr3:28472190-28507143:+
Coord C1 exon
chr3:28472190-28472264
Coord A exon
chr3:28474623-28474769
Coord C2 exon
chr3:28507045-28507143
Length
147 bp
Sequences
Splice sites
3' ss Seq
TTGCACTGAATTTGACTTAGGGG
3' ss Score
5.12
5' ss Seq
AAGGTAGAC
5' ss Score
7.07
Exon sequences
Seq C1 exon
TATGCGATCGAGTCACAGATTCAACTTCATGGACTTGATGTTGAGAAAAGTATGCGGATGATAAAGCCACGAGAG
Seq A exon
GGGGAAGAGACCTTAAGAATGGAGGACATACTGGAAGTAATTGAGAAGGAAGGAGACTCAATTGCTGTGGTCCTGTTCAGTGGCCTGCACTTTTATACTGGACAGCTGTTCAACATTCCTGCCATTACACAAGCCGGACATGCAAAG
Seq C2 exon
GGCTGTTTTGTTGGCTTTGACCTAGCGCATGCGGTTGGAAATGTTGAACTCCACTTACATGACTGGGATGTTGACTTTGCCTGCTGGTGCTCCTACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000029993_MULTIEX1-1/4=C1-3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.027 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0026614=Aminotran_5=FE(7.1=100)
A:
PF0026614=Aminotran_5=FE(14.2=100)
C2:
PF0026614=Aminotran_5=FE(10.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCGATCGAGTCACAGATTCA
R:
CTTGTAGGAGCACCAGCAGG
Band lengths:
172-319
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]