MmuEX6101090 @ mm10
Exon Skipping
Gene
ENSMUSG00000026866 | Kynu
Description
kynureninase (L-kynurenine hydrolase) [Source:MGI Symbol;Acc:MGI:1918039]
Coordinates
chr2:43602243-43629051:+
Coord C1 exon
chr2:43602243-43602317
Coord A exon
chr2:43604142-43604288
Coord C2 exon
chr2:43628953-43629051
Length
147 bp
Sequences
Splice sites
3' ss Seq
TTGCACTGAACTTGATTTAGGGG
3' ss Score
5.2
5' ss Seq
AAGGTAGAC
5' ss Score
7.07
Exon sequences
Seq C1 exon
TATGCTATTGAGTCACAGATTCAACTTCACGGACTTGATGTTGAGAAAAGTATGCGGATGGTAAAGCCACGAGAG
Seq A exon
GGGGAAGAGACCTTAAGGATGGAGGACATACTGGAAGTAATCGAGGAGGAAGGAGACTCGATCGCCGTGATCCTGTTCAGTGGGCTGCACTTTTATACTGGACAGCTGTTCAACATTCCTGCCATAACAAAAGCTGGACATGCAAAG
Seq C2 exon
GGCTGTTTTGTTGGCTTTGACCTAGCACATGCAGTTGGAAATGTTGAACTCCGCTTACATGACTGGGGTGTTGACTTTGCCTGCTGGTGTTCCTATAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026866-'1-13,'1-11,11-13=AN
Average complexity
A_C1
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0026614=Aminotran_5=FE(10.1=100)
A:
PF0026614=Aminotran_5=FE(14.3=100)
C2:
PF0026614=Aminotran_5=FE(13.4=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGCTATTGAGTCACAGATTCAACT
R:
ATAGGAACACCAGCAGGCAAA
Band lengths:
170-317
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types