GgaEX1032723 @ galGal4
Exon Skipping
Gene
ENSGALG00000012418 | KYNU
Description
kynureninase [Source:HGNC Symbol;Acc:HGNC:6469]
Coordinates
chr7:32158778-32199064:+
Coord C1 exon
chr7:32158778-32158860
Coord A exon
chr7:32168612-32168758
Coord C2 exon
chr7:32198972-32199064
Length
147 bp
Sequences
Splice sites
3' ss Seq
GTGCTTTAACTTTGTTTTAGGGG
3' ss Score
9.5
5' ss Seq
AAGGTAGGA
5' ss Score
9.45
Exon sequences
Seq C1 exon
AGGTGTTCATGGCCATTTCAACGGGCAGCGTCCATGGGCTCAGGCGGATGAATGCATTGTGGACTTGATGGCTGAACTGGTGG
Seq A exon
GGGGAGGAGACCTTGAGGATTGAAGATATTCTTGCTGTGATTGAGGAGGAAGGGGACTCTATTGCTGTCATTCTGTTCAGTGGGGTGCAGTACTACACGGGCCAGCTGTTTGACATCCCTAGAATAACAAAAGCTGGCCAAAAAAAG
Seq C2 exon
GTAGTCGTTCTGGAGTTGATAGGATTGAGAAAGCTGGGAAGGATTTTACGTTCATGTAACCTACTGTGAAAGGCTGCAGGAGAACTTACTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012418_MULTIEX2-5/13=C1-C2
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=NA
Domain overlap (PFAM):
C1:
PF0026614=Aminotran_5=FE(15.6=100)
A:
PF0026614=Aminotran_5=FE(14.5=100)
C2:
NA
Main Skipping Isoform:
ENSGALT00000020299fB2231
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTCATGGCCATTTCAACGGG
R:
TCAGTAAGTTCTCCTGCAGCCT
Band lengths:
171-318
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]