HsaEX0035096 @ hg38
Exon Skipping
Gene
ENSG00000115919 | KYNU
Description
kynureninase [Source:HGNC Symbol;Acc:HGNC:6469]
Coordinates
chr2:142957641-142985182:+
Coord C1 exon
chr2:142957641-142957715
Coord A exon
chr2:142960624-142960770
Coord C2 exon
chr2:142985084-142985182
Length
147 bp
Sequences
Splice sites
3' ss Seq
TTGTGCCTAACTTGATTTAGGGG
3' ss Score
7.12
5' ss Seq
AAGGTATGC
5' ss Score
9.55
Exon sequences
Seq C1 exon
TATGCTATTGAGTCACAACTACAACTTCACGGACTTAACATTGAAGAAAGTATGCGGATGATAAAGCCAAGAGAG
Seq A exon
GGGGAAGAAACCTTAAGAATAGAGGATATCCTTGAAGTAATTGAGAAGGAAGGAGACTCAATTGCAGTGATCCTGTTCAGTGGGGTGCATTTTTACACTGGACAGCACTTTAATATTCCTGCCATCACAAAAGCTGGACAAGCGAAG
Seq C2 exon
GGTTGTTATGTTGGCTTTGATCTAGCACATGCAGTTGGAAATGTTGAACTCTACTTACATGACTGGGGAGTTGATTTTGCCTGCTGGTGTTCCTACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000115919_MULTIEX1-1/2=C1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
Show PDB structure
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0026614=Aminotran_5=FE(10.2=100)
A:
PF0026614=Aminotran_5=FE(14.2=100)
C2:
PF0026614=Aminotran_5=FE(13.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCTATTGAGTCACAACTACAACT
R:
CTTGTAGGAACACCAGCAGGC
Band lengths:
172-319
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development