GgaEX1033912 @ galGal3
Exon Skipping
Gene
ENSGALG00000010858 | LRP2
Description
NA
Coordinates
chr7:20265924-20268526:+
Coord C1 exon
chr7:20265924-20266082
Coord A exon
chr7:20267267-20267556
Coord C2 exon
chr7:20268323-20268526
Length
290 bp
Sequences
Splice sites
3' ss Seq
TTATTTCTTTATTATTTTAGGCA
3' ss Score
8.82
5' ss Seq
CAGGTAAGC
5' ss Score
9.88
Exon sequences
Seq C1 exon
GTACATGTACTGGACTGACTGGAGCTCCAATGCAAAGATAGAAAGAGCCACACTTGGAGGAAATTTCAGAACACCTATTGTAAGCACCAATCTGGTATGGCCAAATGGGCTTACCTTGGACTATGAAGAACAGCAGCTATACTGGGCTGATGCAAATCT
Seq A exon
GCAAAAAATTGAGCGATGCACTCTAACTGGTACAAACCGTGAGGTAATTGTTAGTACTGCTCTGCATCCATTTGCAATGACGTTGTTTGATCAGCACATATATTGGACAGATTGGAACACACGAAGCATTTACAGAGCTAATAAATATGATGGTTCAGATCAAATTGTAATGATCATGAATCTTCCACAAAGGCCAATGGATATTCACGTCTGGGCAAAAAGTAAGCAGCAGCAGTGTACCAACCCTTGTAACCAGTTCAATGGTGGTTGCAGTCACATTTGTGCACCAG
Seq C2 exon
GTCCAGCTGGTGCGGAATGTCAGTGTCCATCTGAAGGTCGCTGGTATTTAGCCAATAATAACAAGCACTGCATTGTGGATAATGGTACCAGGTGTGACACTGGTTTCTTCACCTGCCTGAATGGACACTGCATCTCAGAGCGATGGAAATGTGACAACGACAATGACTGTGGTGATGGCAGTGATGAGTTGGAGAGTGTGTGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000010858-'43-45,'43-44,44-45=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0005812=Ldl_recept_b=WD(100=77.8),PF0005812=Ldl_recept_b=PU(23.1=16.7)
A:
PF0005812=Ldl_recept_b=PD(74.4=29.6),PF0005812=Ldl_recept_b=WD(100=38.8),PF146701=FXa_inhibition=PU(36.8=14.3)
C2:
PF146701=FXa_inhibition=PD(60.5=33.3),PF0005713=Ldl_recept_a=WD(100=56.5)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACTGACTGGAGCTCCAATGC
R:
CCATCGCTCTGAGATGCAGTG
Band lengths:
293-583
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]