RnoEX6017280 @ rn6
Exon Skipping
Gene
ENSRNOG00000056184 | Lrp2
Description
LDL receptor related protein 2 [Source:RGD Symbol;Acc:68407]
Coordinates
chr3:55717938-55720355:-
Coord C1 exon
chr3:55720197-55720355
Coord A exon
chr3:55719056-55719345
Coord C2 exon
chr3:55717938-55718141
Length
290 bp
Sequences
Splice sites
3' ss Seq
TTTCTTTCTCTTTGCTTCAGGCA
3' ss Score
10.71
5' ss Seq
CAGGTAAGG
5' ss Score
11.08
Exon sequences
Seq C1 exon
GTACATGTATTGGACTGACTGGGGTACCAACGCCAAAATCGAGAGAGCCACACTGGGAGGAAACTTCCGGGTCCCCATTGTGAACACCAGCTTGGTTTGGCCCAATGGACTCGCTTTGGACCTTGAGACTGACCTTCTGTACTGGGCAGATGCTAGCTT
Seq A exon
GCAGAAAATAGAACGCAGTACTCTCACGGGCACGAACCGAGAAGTCGTTGTCAGCACTGCCTTTCATTCCTTTGGCTTGACTGTCTATGGCCAGTACATTTACTGGACAGACTTGTACACCAGAAAAATCTACCGTGCTAACAAGTACGACGGGTCAGACCTGGTAGCAATGACCACACGTTTGCCCACCCAGCCTAGTGGTATTTCCACAGTGGTCAAAACCCAGCGGCAGCAGTGTAGCAATCCTTGTGACCAGTTCAACGGAGGATGCAGCCATATCTGTGCTCCAG
Seq C2 exon
GTCCAAATGGAGCTGAGTGTCAGTGTCCTCACGAAGGCAACTGGTATCTGGCCAACGATAACAAGTACTGCGTTGTGGACACGGGGACCCGCTGTAATCAACTCCAGTTCACCTGCCTCAATGGGCATTGTATTAATCAGGATTGGAAATGTGACAATGACAACGACTGTGGTGATGGCAGTGACGAGCTTCCTACAGTCTGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000056184-'53-61,'53-59,54-61=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.020 C2=0.000
Domain overlap (PFAM):
C1:
PF0005812=Ldl_recept_b=WD(100=77.8),PF0005812=Ldl_recept_b=PU(23.1=16.7)
A:
PF0005812=Ldl_recept_b=PD(74.4=29.6),PF146701=FXa_inhibition=PU(36.8=14.3)
C2:
PF146701=FXa_inhibition=PD(60.5=33.3),PF0005713=Ldl_recept_a=WD(100=56.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCACACTGGGAGGAAACTTC
R:
GTCACTGCCATCACCACAGTC
Band lengths:
298-588
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]