GgaEX1035136 @ galGal3
Exon Skipping
Gene
ENSGALG00000012119 | MARCO
Description
NA
Coordinates
chr7:30081294-30082604:-
Coord C1 exon
chr7:30082502-30082604
Coord A exon
chr7:30082353-30082406
Coord C2 exon
chr7:30081294-30081338
Length
54 bp
Sequences
Splice sites
3' ss Seq
TGATTTGTTTTTAATTTCAGGAG
3' ss Score
9.24
5' ss Seq
CAGGTAAAG
5' ss Score
9.65
Exon sequences
Seq C1 exon
CTCCAAGGCCCAGCTGGAGAACGTGGCCCTCCAGGACCTCCTGGTCCCAGCAGCCCTGGGCAGAAGGGGGAGAAGGGGGACCTCGGGCCCAGAGGCTTTCCAG
Seq A exon
GAGTGACAGGCAGTCTGGGACCAAAAGGTGAAAAGGGAGACAGAGGAGTTCCAG
Seq C2 exon
GTACTGAAGGGCAAAAAGGAATAAAGGGAGACCAGGGCCTACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012119-'15-18,'15-17,16-18=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=PD(37.9=71.4),PF0139113=Collagen=PU(30.0=51.4)
A:
PF0139113=Collagen=FE(30.0=100)
C2:
PF0139113=Collagen=FE(25.0=100),PF0139113=Collagen=PU(10.0=37.5)

Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAAGGCCCAGCTGGAGAAC
R:
GTAGGCCCTGGTCTCCCTTTA
Band lengths:
142-196
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]