MmuEX6026960 @ mm10
Exon Skipping
Gene
ENSMUSG00000026390 | Marco
Description
macrophage receptor with collagenous structure [Source:MGI Symbol;Acc:MGI:1309998]
Coordinates
chr1:120479344-120484872:-
Coord C1 exon
chr1:120484774-120484872
Coord A exon
chr1:120484625-120484687
Coord C2 exon
chr1:120479344-120479388
Length
63 bp
Sequences
Splice sites
3' ss Seq
ATGTGGTGTCTGTCTTCTAGGAC
3' ss Score
11.45
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
Exon sequences
Seq C1 exon
GAAAACCTGGAGTGCAGGGTGTTCCAGGCCCTCAAGGTGCACCAGGACTTTCAGGTGCCAAGGGTGAGCCAGGACGCACTGGTCTTCCTGGGCCAGCAG
Seq A exon
GACCCCCGGGAATTGCTGGGAATCCAGGGATTGCAGGTGTGAAAGGAAGCAAGGGTGACACAG
Seq C2 exon
GAATTCAAGGACAGAAAGGCACAAAAGGAGAATCAGGAGTCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026390-'12-11,'12-10,13-11=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0139113=Collagen=PU(14.8=56.2)

Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAAACCTGGAGTGCAGGGTG
R:
ACTCCTGATTCTCCTTTTGTGCC
Band lengths:
139-202
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types