Special

MmuEX6026960 @ mm10

Exon Skipping

Gene
Description
macrophage receptor with collagenous structure [Source:MGI Symbol;Acc:MGI:1309998]
Coordinates
chr1:120479344-120484872:-
Coord C1 exon
chr1:120484774-120484872
Coord A exon
chr1:120484625-120484687
Coord C2 exon
chr1:120479344-120479388
Length
63 bp
Sequences
Splice sites
3' ss Seq
ATGTGGTGTCTGTCTTCTAGGAC
3' ss Score
11.45
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
Exon sequences
Seq C1 exon
GAAAACCTGGAGTGCAGGGTGTTCCAGGCCCTCAAGGTGCACCAGGACTTTCAGGTGCCAAGGGTGAGCCAGGACGCACTGGTCTTCCTGGGCCAGCAG
Seq A exon
GACCCCCGGGAATTGCTGGGAATCCAGGGATTGCAGGTGTGAAAGGAAGCAAGGGTGACACAG
Seq C2 exon
GAATTCAAGGACAGAAAGGCACAAAAGGAGAATCAGGAGTCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026390-'12-11,'12-10,13-11=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact

Alternative protein isoforms (Ref)

No structure available
Features
Disorder rate (Iupred):
  C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):

C1:
NO
A:
NO
C2:
PF0139113=Collagen=PU(14.8=56.2)


Main Inclusion Isoform:


Main Skipping Isoform:
NA


Other Inclusion Isoforms:
NA


Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAAACCTGGAGTGCAGGGTG
R:
ACTCCTGATTCTCCTTTTGTGCC
Band lengths:
139-202
Functional annotations
There are 0 annotated functions for this event


GENOMIC CONTEXT[edit]

INCLUSION PATTERN[edit]


SPECIAL DATASETS

  • Ribosome-engaged transcriptomes of neuronal types
  • Neural differentiation time course
  • Muscular differentiation time course
  • Spermatogenesis cell types
  • Reprogramming of fibroblasts to iPSCs
  • Hematopoietic precursors and cell types