MmuEX6026960 @ mm9
Exon Skipping
Gene
ENSMUSG00000026390 | Marco
Description
macrophage receptor with collagenous structure [Source:MGI Symbol;Acc:MGI:1309998]
Coordinates
chr1:122375921-122381449:-
Coord C1 exon
chr1:122381351-122381449
Coord A exon
chr1:122381202-122381264
Coord C2 exon
chr1:122375921-122375965
Length
63 bp
Sequences
Splice sites
3' ss Seq
ATGTGGTGTCTGTCTTCTAGGAC
3' ss Score
11.45
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
Exon sequences
Seq C1 exon
GAAAACCTGGAGTGCAGGGTGTTCCAGGCCCTCAAGGTGCACCAGGACTTTCAGGTGCCAAGGGTGAGCCAGGACGCACTGGTCTTCCTGGGCCAGCAG
Seq A exon
GACCCCCGGGAATTGCTGGGAATCCAGGGATTGCAGGTGTGAAAGGAAGCAAGGGTGACACAG
Seq C2 exon
GAATTCAAGGACAGAAAGGCACAAAAGGAGAATCAGGAGTCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026390-'10-11,'10-10,11-11=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0139113=Collagen=PU(14.8=56.2)

Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAAACCTGGAGTGCAGGGTG
R:
ACTCCTGATTCTCCTTTTGTGCC
Band lengths:
139-202
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: