HsaEX6015236 @ hg38
Exon Skipping
Gene
ENSG00000019169 | MARCO
Description
macrophage receptor with collagenous structure [Source:HGNC Symbol;Acc:HGNC:6895]
Coordinates
chr2:118982156-118990633:+
Coord C1 exon
chr2:118982156-118982254
Coord A exon
chr2:118982348-118982410
Coord C2 exon
chr2:118990589-118990633
Length
63 bp
Sequences
Splice sites
3' ss Seq
CTGTGGTGTCTGTTGTCCAGGAC
3' ss Score
7.59
5' ss Seq
CAGGTAACA
5' ss Score
8.88
Exon sequences
Seq C1 exon
GACAACCTGGACTGCAGGGTGTTCCGGGCCCTCCTGGTGCAGTGGGACACCCAGGTGCCAAGGGTGAGCCTGGCAGTGCTGGCTCCCCTGGGCGAGCAG
Seq A exon
GACTTCCAGGGAGCCCCGGGAGTCCAGGAGCCACAGGCCTGAAAGGAAGCAAAGGGGACACAG
Seq C2 exon
GACTTCAAGGACAGCAAGGAAGAAAAGGAGAATCAGGAGTTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000019169-'21-19,'21-16,22-19
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0139113=Collagen=PU(14.3=56.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACCTGGACTGCAGGGTGTTC
R:
TCCTGATTCTCCTTTTCTTCCTTGC
Band lengths:
134-197
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains