RnoEX6056298 @ rn6
Exon Skipping
Gene
ENSRNOG00000049303 | Marco
Description
macrophage receptor with collagenous structure [Source:RGD Symbol;Acc:1589662]
Coordinates
chr16:85120435-85126087:-
Coord C1 exon
chr16:85125989-85126087
Coord A exon
chr16:85125839-85125901
Coord C2 exon
chr16:85120435-85120479
Length
63 bp
Sequences
Splice sites
3' ss Seq
ATGTGCTGTCTGTCTTCTAGGAC
3' ss Score
12.49
5' ss Seq
TAGGTAAGT
5' ss Score
9.66
Exon sequences
Seq C1 exon
GAAAACTTGGAGTGCAGGGTCCTCCAGGCCCTCCTGGTGCACCAGGACAATCAGGTGCCAAGGGTGAGCCGGGGCGCACTGGTCCTCCTGGGCCAACAG
Seq A exon
GACCCCCAGGGATTGCCGGTAATCCAGGGGCTGCAGGTTTGAAAGGAAGCAAGGGGGACATAG
Seq C2 exon
GAATTCAAGGACAGAAAGGCACAAAAGGAGAATCAGGAGTCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000049303-'9-11,'9-10,10-11=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=PD(13.3=23.5),PF0139113=Collagen=FE(41.8=100)
A:
PF0139113=Collagen=FE(26.6=100),PF0139113=Collagen=PU(8.3=27.3)
C2:
PF0139113=Collagen=FE(19.0=100),PF0139113=Collagen=FE(20.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAAACTTGGAGTGCAGGGTCC
R:
ACTCCTGATTCTCCTTTTGTGCC
Band lengths:
138-201
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]