GgaEX1035136 @ galGal4
Exon Skipping
Gene
ENSGALG00000012119 | MARCO
Description
macrophage receptor MARCO [Source:RefSeq peptide;Acc:NP_990067]
Coordinates
chr7:27987388-27988691:-
Coord C1 exon
chr7:27988596-27988691
Coord A exon
chr7:27988447-27988500
Coord C2 exon
chr7:27987388-27987432
Length
54 bp
Sequences
Splice sites
3' ss Seq
TGATTTGTTTTTAATTTCAGGAG
3' ss Score
9.24
5' ss Seq
CAGGTAAAG
5' ss Score
9.65
Exon sequences
Seq C1 exon
GCCCAGCTGGAGAACGTGGCCCTCCAGGACCTCCTGGTCCCAGCAGCCCTGGGCAGAAGGGGGAGAAGGGGGACCTCGGGCCCAGAGGCTTTCCAG
Seq A exon
GAGTGACAGGCAGTCTGGGACCAAAAGGTGAAAAGGGAGACAGAGGAGTTCCAG
Seq C2 exon
GTACTGAAGGGCAAAAAGGAATAAAGGGAGACCAGGGCCTACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012119-'9-11,'9-10,10-11
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=PU(32.3=60.6)
A:
PF0139113=Collagen=FE(29.0=100)
C2:
PF0139113=Collagen=FE(24.2=100),PF0139113=Collagen=PU(15.0=56.2)

Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGCTGGAGAACGTGGCC
R:
GTAGGCCCTGGTCTCCCTTTA
Band lengths:
135-189
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]