HsaEX6015236 @ hg19
Exon Skipping
Gene
ENSG00000019169 | MARCO
Description
macrophage receptor with collagenous structure [Source:HGNC Symbol;Acc:6895]
Coordinates
chr2:119739732-119748209:+
Coord C1 exon
chr2:119739732-119739830
Coord A exon
chr2:119739924-119739986
Coord C2 exon
chr2:119748165-119748209
Length
63 bp
Sequences
Splice sites
3' ss Seq
CTGTGGTGTCTGTTGTCCAGGAC
3' ss Score
7.59
5' ss Seq
CAGGTAACA
5' ss Score
8.88
Exon sequences
Seq C1 exon
GACAACCTGGACTGCAGGGTGTTCCGGGCCCTCCTGGTGCAGTGGGACACCCAGGTGCCAAGGGTGAGCCTGGCAGTGCTGGCTCCCCTGGGCGAGCAG
Seq A exon
GACTTCCAGGGAGCCCCGGGAGTCCAGGAGCCACAGGCCTGAAAGGAAGCAAAGGGGACACAG
Seq C2 exon
GACTTCAAGGACAGCAAGGAAGAAAAGGAGAATCAGGAGTTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000019169-'12-12,'12-11,13-12=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0139113=Collagen=PU(14.3=56.2)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACCTGGACTGCAGGGTGTTC
R:
TCCTGATTCTCCTTTTCTTCCTTGC
Band lengths:
134-197
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)