GgaEX1037883 @ galGal4
Exon Skipping
Gene
ENSGALG00000012533 | MYH9
Description
myosin-9 [Source:RefSeq peptide;Acc:NP_990808]
Coordinates
chr1:51635918-51639502:+
Coord C1 exon
chr1:51635918-51636061
Coord A exon
chr1:51638241-51638336
Coord C2 exon
chr1:51639384-51639502
Length
96 bp
Sequences
Splice sites
3' ss Seq
AGCTGTTATTATTTCAAAAGGTC
3' ss Score
5.18
5' ss Seq
CAGGTAATC
5' ss Score
6.99
Exon sequences
Seq C1 exon
CTGATCTACTTCTGGAGCCTTACAACAAATACCGCTTCCTTTCCAATGGACATGTTACGATCCCGGGTCAGCAAGACAAAGATATGTTTCAGGAGACCATGGAAGCAATGAGGATCATGGGCATCCCAGATGAGGAACAAATAG
Seq A exon
GTCTTCTGAAGGTTATCTCAGGTGTTCTTCAGCTTGGCAACATAGTCTTCAAGAAAGAGCGCAACACAGACCAAGCCTCTATGCCAGACAATACAG
Seq C2 exon
CTGCTCAGAAAGTGTCTCATCTTCTGGGTATCAACGTGACGGACTTCACCAGAGGTATTCTGACTCCTCGCATCAAAGTTGGACGAGATTATGTCCAGAAAGCTCAGACCAAAGAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012533-'23-17,'23-16,24-17
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.041 A=0.182 C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(7.0=100)
A:
PF0006316=Myosin_head=FE(4.7=100)
C2:
PF0006316=Myosin_head=FE(5.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACATGTTACGATCCCGGGTCA
R:
CGTCCAACTTTGATGCGAGGA
Band lengths:
180-276
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]