BtaEX6023157 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000010402 | MYH9
Description
Bos taurus myosin, heavy chain 9, non-muscle (MYH9), mRNA. [Source:RefSeq mRNA;Acc:NM_001192762]
Coordinates
chr5:75122978-75124830:-
Coord C1 exon
chr5:75124687-75124830
Coord A exon
chr5:75123860-75123955
Coord C2 exon
chr5:75122978-75123096
Length
96 bp
Sequences
Splice sites
3' ss Seq
GCCTTTCATTGCACCCCAAGGCT
3' ss Score
4.55
5' ss Seq
CAGGTAATC
5' ss Score
6.99
Exon sequences
Seq C1 exon
CTGATCTCCTGCTGGAGTCATACAACAAATACCGCTTCCTGTCCAATGGGCATGTCACCATTCCCGGGCAACAGGACAAGGACATGTTCCAGGAGACCATGGAGGCCTTTCGGATTATGGGCATCCCAGAGGAAGAGCAGATGG
Seq A exon
GCTTGCTGCGAGTCATCTCGGGGGTCCTCCAGCTCGGCAACATCGTCTTCAAGAAGGAGCGTAACAGCGACCAGGCCTCCATGCCCGACAACACAG
Seq C2 exon
CTGCCCAGAAAGTATCCCACCTCTTGGGTATCAACGTGACCGATTTCACCCGAGGAATCCTCACCCCGCGCATCAAGGTGGGACGGGATTATGTCCAGAAGGCGCAGACGAAGGAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000010402-'17-18,'17-16,18-18=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.041 A=0.152 C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(7.0=100)
A:
PF0006316=Myosin_head=FE(4.7=100)
C2:
PF0006316=Myosin_head=FE(5.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCAACAGGACAAGGACATGT
R:
GGACATAATCCCGTCCCACCT
Band lengths:
174-270
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]