HsaEX6026595 @ hg19
Exon Skipping
Gene
ENSG00000100345 | MYH9
Description
myosin, heavy chain 9, non-muscle [Source:HGNC Symbol;Acc:7579]
Coordinates
chr22:36714252-36716408:-
Coord C1 exon
chr22:36716265-36716408
Coord A exon
chr22:36715585-36715680
Coord C2 exon
chr22:36714252-36714370
Length
96 bp
Sequences
Splice sites
3' ss Seq
GCCTCTGATTGCACCCAAAGGCC
3' ss Score
4.92
5' ss Seq
CAGGTAACA
5' ss Score
8.88
Exon sequences
Seq C1 exon
CCGATCTCCTGTTGGAGCCGTACAACAAATACCGCTTCCTGTCCAATGGACACGTCACCATCCCCGGGCAGCAGGACAAGGACATGTTCCAGGAGACCATGGAGGCCATGAGGATTATGGGCATCCCAGAAGAGGAGCAAATGG
Seq A exon
GCCTGCTGCGGGTCATCTCAGGGGTTCTTCAGCTCGGCAACATCGTCTTCAAGAAGGAGCGGAACACTGACCAGGCGTCCATGCCCGACAACACAG
Seq C2 exon
CTGCCCAAAAGGTGTCCCATCTCTTGGGTATCAATGTGACCGATTTCACCAGAGGAATCCTCACCCCGCGCATCAAGGTGGGACGGGATTACGTCCAGAAGGCGCAGACTAAAGAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000100345-'21-26,'21-24,22-26=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.041 A=0.182 C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(7.0=100)
A:
PF0006316=Myosin_head=FE(4.7=100)
C2:
PF0006316=Myosin_head=FE(5.7=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTTCCAGGAGACCATGGAGG
R:
CTGCTCTTTAGTCTGCGCCTT
Band lengths:
179-275
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)