MmuEX6054675 @ mm9
Exon Skipping
Gene
ENSMUSG00000022443 | Myh9
Description
myosin, heavy polypeptide 9, non-muscle [Source:MGI Symbol;Acc:MGI:107717]
Coordinates
chr15:77619349-77621277:-
Coord C1 exon
chr15:77621134-77621277
Coord A exon
chr15:77620298-77620393
Coord C2 exon
chr15:77619349-77619467
Length
96 bp
Sequences
Splice sites
3' ss Seq
GTCTTTCCTAAACACCACAGGCT
3' ss Score
5.37
5' ss Seq
CAGGTAACA
5' ss Score
8.88
Exon sequences
Seq C1 exon
CTGATCTCCTGTTGGAGCCATACAACAAATACCGCTTCCTGTCCAACGGGCACGTCACCATCCCTGGGCAGCAGGACAAGGACATGTTCCAGGAGACAATGGAGGCCATGAGAATTATGGGCATCCCAGAGGATGAGCAGATGG
Seq A exon
GCTTGCTGCGGGTCATCTCTGGGGTCCTTCAGCTTGGCAACATTGCCTTCAAGAAGGAGCGGAACACTGACCAGGCGTCCATGCCGGACAACACAG
Seq C2 exon
CTGCTCAAAAGGTGTCCCACCTCCTGGGGATCAATGTGACCGACTTCACCAGAGGCATCCTCACCCCACGCATCAAGGTGGGCAGAGACTATGTGCAGAAGGCGCAGACTAAAGAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000022443-'21-14,'21-13,23-14=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.041 A=0.273 C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(7.0=100)
A:
PF0006316=Myosin_head=FE(4.7=100)
C2:
PF0006316=Myosin_head=FE(5.7=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGAGACAATGGAGGCCATGA
R:
CTTTAGTCTGCGCCTTCTGCA
Band lengths:
168-264
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: