DreEX0048406 @ danRer10
Exon Skipping
Gene
ENSDARG00000001014 | myh9b
Description
myosin, heavy chain 9b, non-muscle [Source:ZFIN;Acc:ZDB-GENE-030131-998]
Coordinates
chr3:5253817-5258242:-
Coord C1 exon
chr3:5258099-5258242
Coord A exon
chr3:5257905-5258000
Coord C2 exon
chr3:5253817-5254088
Length
96 bp
Sequences
Splice sites
3' ss Seq
GTGTGTGTCGCCCCCTGCAGGTC
3' ss Score
11.31
5' ss Seq
CCGGTAAAT
5' ss Score
6.89
Exon sequences
Seq C1 exon
CTGAGCTGTGTCTGGAGGGCTACAATAAGTACCGCTTCCTGTCCAATGGGAACGTGACCATCCCGGGACAGCAGGACCGAGACATGTACGTGGAGACTGTGGAGGCCATGAGGATTATGGGCTTCTCTGAGGAGGAGCATGTCG
Seq A exon
GTCTGCTGAGGGTTATTTCATCTGTGCTGCAGCTGGGCAACATGTCCTTCAAGAAGGAGCGTCATTCAGACCAGGCCTCCATGCCTGATGACACCG
Seq C2 exon
CCGCTCAGAAGGTGTGCCATCTGATGGGCATGAATGTGACCGATTTCACCCGTGCCATCCTCTCGCCCCGGATAAAAGTGGGCCGGGACTACGTGCAGAAGGCGCAGACACAGGAGCAGGCCGAGTTTGCAGTGGAGGCTCTGGCCAAAGCCACATACGAGAGGATGTTTCGCTGGCTGGTGATGCGCATCAACAAAGCTCTGGATAAGACCAAGCGTCAGGGCGCTTCCTTCATCGGCATTCTGGACATCGCCGGCTTTGAGATCTTTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000001014-'18-15,'18-14,19-15
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.273 C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(7.0=100)
A:
PF0006316=Myosin_head=FE(4.7=100)
C2:
PF0006316=Myosin_head=FE(13.1=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAATGGGAACGTGACCATCCC
R:
TTTTATCCGGGGCGAGAGGAT
Band lengths:
178-274
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]