GgaEX1037977 @ galGal3
Exon Skipping
Gene
ENSGALG00000016837 | MYO16
Description
NA
Coordinates
chr1:142371442-142397376:+
Coord C1 exon
chr1:142371442-142371676
Coord A exon
chr1:142395272-142395342
Coord C2 exon
chr1:142397233-142397376
Length
71 bp
Sequences
Splice sites
3' ss Seq
TCTTTACTTTGATATTTCAGTGC
3' ss Score
7.16
5' ss Seq
CTGGTAAGA
5' ss Score
9.45
Exon sequences
Seq C1 exon
TCACATGAGATGGAAATTGACCAGTGCTTGCTTGAGTCCCTCCCTCTCGGCCAGCGGCAGCGGCTGGTGAAGCGGATGCGTTGTGATCAAATAAAAGCATATTATGAACGAGAAAAGGCTTTCCAGAAGCGGGAGGGTTATGTGAAAAAACTGAAACATGGAAAGAATCATCGAGTTCGTTTCAACCTTGCTGATATGATACAGGATGCCATCATACATCATGACGATAAGGAAG
Seq A exon
TGCTGCGGCTGTTGAAGGATGGTGCTGACCCTCATATGCTTGTTTCCTCGGGAGGTTCCTTGCTCCATCTG
Seq C2 exon
TGTGCTCGCTACGATAATGCATTTGCTGCAGAAATTCTGATTGACAGAGGAGTGAATGTAAATCATCAAGATGAGGATTTTTGGACATCAATGCATGTAGCCTGTGCTTGTGATAATCCTGATATTGTCCTGCTGCTGCTGCTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000016837-'0-3,'0-2,1-3=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127962=Ank_2=PU(12.9=15.4)
A:
PF127962=Ank_2=FE(24.7=100)
C2:
PF127962=Ank_2=FE(50.5=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCGAGTTCGTTTCAACCTTGCT
R:
GCACAGGCTACATGCATTGATG
Band lengths:
172-243
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]