BtaEX0023492 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000018237 | MYO16
Description
myosin XVI [Source:HGNC Symbol;Acc:HGNC:29822]
Coordinates
chr12:87918740-87958172:+
Coord C1 exon
chr12:87918740-87918965
Coord A exon
chr12:87950222-87950292
Coord C2 exon
chr12:87958029-87958172
Length
71 bp
Sequences
Splice sites
3' ss Seq
CCCCTCTCTCATTCTTCCAGTGC
3' ss Score
10.35
5' ss Seq
CTGGTAAGA
5' ss Score
9.45
Exon sequences
Seq C1 exon
ATGGAAATTGACCAGTGCTTGCTGGAGTCCCTCCCCCTGGGCCAACGGCAGCGGCTGGTGAAACGCATGCGCTGTGAGCAAGTCAAAGCGTACTATGAGCGAGAGAAAGCTTTTCAGAAGCAGGAGGGGCTCCTGAAGAAGCTGAAGCATGGGAAGAACCAGAAGGTTCACTTTAATCTTGCTGACATGATACAGGATGCCATTATCCACCATGATGACAAGGAAG
Seq A exon
TGCTGCGACTCCTGAAGGAGGGGGCCGACCCCCACATGCCTGTGTCCTCCGGAGGGTCCCTGCTCCATCTG
Seq C2 exon
TGCGCTCGGTATGATAATGTCTTCATCGCAGAGATCCTGATTGACAGAGGGGCCAATGTCAACCACCAGGATGAAGACTTCTGGACACCGATGCACATTGCCTGCGCGTGTGACAACCCTGACGTTGTCCTGCTGCTTATATTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000018237-'0-4,'0-2,1-4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127962=Ank_2=PU(12.9=15.8)
A:
PF127962=Ank_2=FE(24.7=100)
C2:
PF127962=Ank_2=FE(50.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGAAGCATGGGAAGAACCA
R:
GTGCATCGGTGTCCAGAAGTC
Band lengths:
182-253
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development