MmuEX0030442 @ mm9
Exon Skipping
Gene
ENSMUSG00000039057 | Myo16
Description
myosin XVI [Source:MGI Symbol;Acc:MGI:2685951]
Coordinates
chr8:10272572-10322743:+
Coord C1 exon
chr8:10272572-10272797
Coord A exon
chr8:10315455-10315525
Coord C2 exon
chr8:10322600-10322743
Length
71 bp
Sequences
Splice sites
3' ss Seq
TTTTCTCTCTTCTCTTGCAGTGC
3' ss Score
12.67
5' ss Seq
CTGGTAAGA
5' ss Score
9.45
Exon sequences
Seq C1 exon
ATGGAAATTGACCAGTGCTTGCTGGAGTCCCTCCCCCTGGGCCAGCGGCAGCGTCTGGTGAAGCGCATGCGCTGTGAGCAAATCAAAGCTTACTATGAGCGAGAGAAAGTGTTCCAGAAGCAGGAAGGGCCCCTGAAGAGAAGCAAGCCTGGGAAGAGGCAGAAGGTTCGCTTCGGCCTGGCTGACATGATTCAGGATGCTGTCATCCACCATCATGACAAAGAGG
Seq A exon
TGCTTCAACTCTTGAAGGAGGGGGCAGATCCACACACTCTCGTGTCCTCAGGAGGGTCTTTGCTACACCTG
Seq C2 exon
TGTGCTAGATACGACAACGTCTTCATTGCAGAAGTCCTCATTGACAGGGGCGTCAATGTCAACCATCAGGATGAGGACTTTTGGACCCCAATGCACATTGCCTGTGCCTGTGACAACCCTGACATTGTCCTGTTGCTCATATTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000039057_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.092 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127962=Ank_2=PU(12.9=15.8)
A:
PF127962=Ank_2=FE(24.7=100)
C2:
PF127962=Ank_2=FE(50.5=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGTTCCAGAAGCAGGAAGGG
R:
GACATTGACGCCCCTGTCAAT
Band lengths:
178-249
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: