RnoEX0057167 @ rn6
Exon Skipping
Gene
ENSRNOG00000016483 | Myo16
Description
myosin XVI [Source:RGD Symbol;Acc:621561]
Coordinates
chr16:84893952-84939323:-
Coord C1 exon
chr16:84939066-84939323
Coord A exon
chr16:84897815-84897885
Coord C2 exon
chr16:84893952-84894095
Length
71 bp
Sequences
Splice sites
3' ss Seq
TTTTCTCTCTTCTCTTGCAGTGC
3' ss Score
12.67
5' ss Seq
CTGGTAAGA
5' ss Score
9.45
Exon sequences
Seq C1 exon
ACCAGCTATGTAATGTTTTTCGATCTCATGAGATGGAAATTGACCAGTGCTTGCTGGAGTCCCTCCCCCTGGGCCAGCGGCAGCGTCTGGTGAGGCGCATGCGCTGTGAGCAAATCAAAGCCTACTATGAGCGAGAGAAAGTGTTCCAGAAGCAGGAAGGGCTCCTGAAGAGAATTAAGCCTGGGAAAAGCCAGAAGGTCCGCTTCGGCCTGGCTGACATGATTCAGGATGCCATTATCCACCACCACGACAAAGAGG
Seq A exon
TGCTTCAACTCTTGAAGGAGGGGGCCGACCCACACACTCTTGTTTCCTCAGGAGGGTCTTTACTTCACCTG
Seq C2 exon
TGTGCTCGCTATGACAATGTCTTCATCGCAGAAGTCCTCATTGACAGGGGTGTCAATGTCAACCACCAGGATGAGGACTTTTGGGCCCCAATGCACATTGCCTGTGCCTGTGACAACCCTGACATTGTCCTGTTGCTCATATTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000016483-'1-2,'1-1,2-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127962=Ank_2=PU(12.9=15.8)
A:
PF127962=Ank_2=FE(24.7=100)
C2:
PF127962=Ank_2=FE(50.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGCCTGGGAAAAGCCAGAAG
R:
GCCCAAAAGTCCTCATCCTGG
Band lengths:
168-239
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]