DreEX0048575 @ danRer10
Exon Skipping
Gene
ENSDARG00000078582 | myo16
Description
myosin XVI [Source:ZFIN;Acc:ZDB-GENE-070912-470]
Coordinates
chr9:7931125-7966334:+
Coord C1 exon
chr9:7931125-7931385
Coord A exon
chr9:7963438-7963508
Coord C2 exon
chr9:7966191-7966334
Length
71 bp
Sequences
Splice sites
3' ss Seq
TTTTGTTTCTTTTGTTTCAGTTC
3' ss Score
10.9
5' ss Seq
CTGGTAAGA
5' ss Score
9.45
Exon sequences
Seq C1 exon
GTTGTTTTCAGCTATGTAACGTGTTCAGGCAGAACATGGAGATAGACCAGTGTCTGCTGGAGTCTCTGCCGTTGGGCCAGCGTCAGCGGCTGGTCAGACGCATGCGTTGCGAGCAGCTGCGGGTTTACTATGAGCGCGAACGGACACTTCAGAAACAGAGCTTCCCCAAGTCCCGCTCTACCAACCGCAAGAAACAAAAGATCAGCTTCCCGCTTTCAGACATCATCCAGGACGCCATCATTCGGCATGACGACAAAGAAG
Seq A exon
TTCTAAGGCTGCTGAAGGAGGGAGCTGACCTGAGCACAGTCATTTCCTCTGGAGGATCTCTGCTCCATCTG
Seq C2 exon
TGCGCTCGCCATGACAATGTGTTTGCCGCTGAGATTTTGATAGAGAAAGGACTGAACGTTAACCTGCAGGATGAAGACCTCTGGACTGCCCTGCATGTGGCCTGTGCCTGCGATCATGCAGATATGGTGCTGCTTCTGCTGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000078582-'6-5,'6-4,7-5
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.092 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127962=Ank_2=PU(12.0=14.5)
A:
PF127962=Ank_2=FE(25.0=100)
C2:
PF127962=Ank_2=FE(51.1=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGGTTTACTATGAGCGCGAA
R:
TCTCAGCGGCAAACACATTGT
Band lengths:
176-247
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]