HsaEX0041040 @ hg19
Exon Skipping
Gene
ENSG00000041515 | MYO16
Description
myosin XVI [Source:HGNC Symbol;Acc:29822]
Coordinates
chr13:109318234-109379931:+
Coord C1 exon
chr13:109318234-109318497
Coord A exon
chr13:109365009-109365079
Coord C2 exon
chr13:109379788-109379931
Length
71 bp
Sequences
Splice sites
3' ss Seq
CTCCTCTCTGTTGTTTTCAGTGC
3' ss Score
10.31
5' ss Seq
CTGGTAAGA
5' ss Score
9.45
Exon sequences
Seq C1 exon
GTTGCTTTCAGCTATGTAACGTTTTTCGATCCCATGAGATGGAAATCGACCAGTGCTTGCTAGAGTCCCTTCCCCTTGGCCAACGGCAGCGTCTAGTGAAGCGCATGCGCTGTGAGCAAATCAAAGCCTACTATGAGCGCGAGAAGGCTTTTCAGAAGCAGGAAGGGTTCCTGAAAAGGCTGAAGCATGCGAAGAATCCGAAAGTTCACTTCAACCTCACGGACATGCTACAGGACGCGATTATCCACCACAATGACAAAGAAG
Seq A exon
TGCTTCGGCTCCTGAAGGAGGGGGCAGACCCCCACACCCTCGTCTCCTCGGGAGGGTCCCTGCTCCATCTG
Seq C2 exon
TGTGCTCGGTATGATAATGCCTTCATTGCAGAAATTCTGATTGACAGAGGAGTCAACGTCAACCACCAGGATGAAGACTTCTGGACGCCCATGCACATTGCCTGTGCCTGCGATAACCCTGATATTGTCCTGCTTCTTGTATTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000041515-'2-5,'2-4,3-5
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127962=Ank_2=PU(9.6=15.8)
A:
PF127962=Ank_2=FE(24.7=100)
C2:
PF127962=Ank_2=FE(50.5=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGGCTGAAGCATGCGAAGAA
R:
GGCGTCCAGAAGTCTTCATCC
Band lengths:
178-249
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)