GgaEX1037977 @ galGal4
Exon Skipping
Gene
ENSGALG00000016837 | MYO16
Description
myosin XVI [Source:HGNC Symbol;Acc:HGNC:29822]
Coordinates
chr1:137462786-137488746:+
Coord C1 exon
chr1:137462786-137463049
Coord A exon
chr1:137486642-137486712
Coord C2 exon
chr1:137488603-137488746
Length
71 bp
Sequences
Splice sites
3' ss Seq
TCTTTACTTTGATATTTCAGTGC
3' ss Score
7.16
5' ss Seq
CTGGTAAGA
5' ss Score
9.45
Exon sequences
Seq C1 exon
GCTGTTTCCAGCTATGTAATGTTTTTCGGTCACATGAGATGGAAATTGACCAGTGCTTGCTTGAGTCCCTCCCTCTCGGCCAGCGGCAGCGGCTGGTGAAGCGGATGCGTTGTGATCAAATAAAAGCATATTATGAACGAGAAAAGGCTTTCCAGAAGCGGGAGGGTTATGTGAAAAAACTGAAACATGGAAAGAATCATCGAGTTCGTTTCAACCTTGCTGATATGATACAGGATGCCATCATACATCATGACGATAAGGAAG
Seq A exon
TGCTGCGGCTGTTGAAGGATGGTGCTGACCCTCATATGCTTGTTTCCTCGGGAGGTTCCTTGCTCCATCTG
Seq C2 exon
TGTGCTCGCTACGATAATGCATTTGCTGCAGAAATTCTGATTGACAGAGGAGTGAATGTAAATCATCAAGATGAGGATTTTTGGACATCAATGCATGTAGCCTGTGCTTGTGATAATCCTGATATTGTCCTGCTGCTGCTGCTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000016837-'3-4,'3-3,5-4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127962=Ank_2=PU(12.9=13.5)
A:
PF127962=Ank_2=FE(24.7=100)
C2:
PF127962=Ank_2=FE(50.5=100)
Main Skipping Isoform:
ENSGALT00000027192fB9692
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCGAGTTCGTTTCAACCTTGCT
R:
GCACAGGCTACATGCATTGATG
Band lengths:
172-243
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]