GgaEX1040517 @ galGal4
Exon Skipping
Gene
ENSGALG00000008681 | NSMF
Description
NMDA receptor synaptonuclear signaling and neuronal migration factor [Source:HGNC Symbol;Acc:HGNC:29843]
Coordinates
chr17:1749727-1751536:+
Coord C1 exon
chr17:1749727-1749810
Coord A exon
chr17:1750860-1750893
Coord C2 exon
chr17:1751466-1751536
Length
34 bp
Sequences
Splice sites
3' ss Seq
TGCCTCTTTTTGCTTTCCAGGAC
3' ss Score
11.81
5' ss Seq
TAGGTATGC
5' ss Score
7.53
Exon sequences
Seq C1 exon
CTCATTTCTTCAAAGGTGCCCAAAGCTGAGTATGTCCCAACAATTATCCGCAGGGACGATCCCTCCATCATCCCCATTCTCTAT
Seq A exon
GACCATGAACACGCCACCTTTGATGACATCCTAG
Seq C2 exon
AGGAAATAGAGAAGAAGCTTAACATTTATCGGAAAGGCTGCAAAATCTGGAAGATGCTGATATTTTGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008681-'18-27,'18-26,20-27
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
ENSGALT00000014129fB10058
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCCAAAGCTGAGTATGTCCC
R:
CCAGATTTTGCAGCCTTTCCG
Band lengths:
117-151
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]