RnoEX6015782 @ rn6
Exon Skipping
Gene
ENSRNOG00000008810 | Nsmf
Description
NMDA receptor synaptonuclear signaling and neuronal migration factor [Source:RGD Symbol;Acc:619819]
Coordinates
chr3:2268291-2268697:+
Coord C1 exon
chr3:2268291-2268374
Coord A exon
chr3:2268505-2268538
Coord C2 exon
chr3:2268627-2268697
Length
34 bp
Sequences
Splice sites
3' ss Seq
TGTGGCCTCTCTGTTCTCAGGAC
3' ss Score
11.91
5' ss Seq
TGGGTGTGT
5' ss Score
3.3
Exon sequences
Seq C1 exon
CTAATCTCCTCCAAGGTGCCCAAGGCCGAGTACATCCCAACCATCATCCGCAGAGACGACCCATCCATCATCCCCATCCTCTAT
Seq A exon
GACCATGAGCACGCAACGTTCGAGGACATCCTGG
Seq C2 exon
AGGAAATAGAGAAGAAGTTGAACATCTATCACAAGGGGGCCAAGATCTGGAAGATGCTGATTTTCTGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000008810-'19-22,'19-21,21-22=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.167 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAAGGCCGAGTACATCCCAAC
R:
AGATCTTGGCCCCCTTGTGAT
Band lengths:
112-146
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]