DreEX0051764 @ danRer10
Exon Skipping
Gene
ENSDARG00000060025 | nsmfa
Description
NMDA receptor synaptonuclear signaling and neuronal migration factor a [Source:ZFIN;Acc:ZDB-GENE-091204-32]
Coordinates
chr21:13369256-13374504:-
Coord C1 exon
chr21:13374421-13374504
Coord A exon
chr21:13372605-13372638
Coord C2 exon
chr21:13369256-13369326
Length
34 bp
Sequences
Splice sites
3' ss Seq
TTTATTATTTTTTTCTCCAGGAT
3' ss Score
10.63
5' ss Seq
TGGGTATGT
5' ss Score
7.43
Exon sequences
Seq C1 exon
CTGATCTCATCTAAAGTTCCCAAAGCCGAATATCTTCCCAACATCATCAAAAGAGACGATCCTTCTATTATCCCCATTCTCTAC
Seq A exon
GATCATGAGCATGCCACGTTTGATGATATTTTGG
Seq C2 exon
AGGAGATTGAGAAGAGATTGACAGCCTACAGAAGGGGCTCTAAAATCTGGCGAATGCTGATCTTCTGTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000060025-'10-12,'10-11,11-12
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF142521=DUF4347=FE(19.1=100)
A:
PF142521=DUF4347=FE(7.8=100)
C2:
PF142521=DUF4347=FE(16.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCAAAGCCGAATATCTTCCCA
R:
TCGCCAGATTTTAGAGCCCCT
Band lengths:
119-153
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]