HsaEX0042575 @ hg19
Exon Skipping
Gene
ENSG00000165802 | NELF
Description
nasal embryonic LHRH factor [Source:HGNC Symbol;Acc:29843]
Coordinates
chr9:140346817-140347271:-
Coord C1 exon
chr9:140347188-140347271
Coord A exon
chr9:140347005-140347038
Coord C2 exon
chr9:140346817-140346887
Length
34 bp
Sequences
Splice sites
3' ss Seq
TGGCCTGTGTCTGTCCCCAGGAC
3' ss Score
12.09
5' ss Seq
TTGGTATGT
5' ss Score
7.12
Exon sequences
Seq C1 exon
CTCATTTCCTCCAAGGTGCCCAAGGCTGAGTACATCCCCACTATCATCCGCCGGGATGACCCCTCCATCATCCCCATCCTCTAC
Seq A exon
GACCATGAGCACGCAACCTTCGAGGACATCCTTG
Seq C2 exon
AGGAGATAGAGAGGAAGCTGAACGTCTACCACAAGGGAGCCAAGATCTGGAAAATGCTGATTTTCTGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000165802_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.029 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF142521=DUF4347=PU(19.6=65.9)
A:
PF142521=DUF4347=FE(7.8=100)
C2:
PF142521=DUF4347=FE(16.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCATTTCCTCCAAGGTGCCC
R:
CCCTTGTGGTAGACGTTCAGC
Band lengths:
121-155
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)