MmuEX1018820 @ mm10
Exon Skipping
Gene
ENSMUSG00000006476 | Nsmf
Description
NMDA receptor synaptonuclear signaling and neuronal migration factor [Source:MGI Symbol;Acc:MGI:1861755]
Coordinates
chr2:25060479-25060884:+
Coord C1 exon
chr2:25060479-25060562
Coord A exon
chr2:25060692-25060725
Coord C2 exon
chr2:25060814-25060884
Length
34 bp
Sequences
Splice sites
3' ss Seq
TGTGGCCTATCTGTTCTCAGGAC
3' ss Score
11.16
5' ss Seq
TGGGTGTGT
5' ss Score
3.3
Exon sequences
Seq C1 exon
CTCATCTCCTCCAAGGTGCCAAAGGCCGAGTATATCCCTACTATCATCCGCAGAGATGACCCGTCCATCATTCCCATCCTCTAC
Seq A exon
GACCACGAGCATGCAACCTTCGAGGACATCCTGG
Seq C2 exon
AGGAAATAGAGAAGAAATTGAACATCTATCACAAGGGGGCCAAGATCTGGAAGATGCTGATTTTCTGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000006476-'26-22,'26-21,28-22
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.044 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF142521=DUF4347=FE(19.7=100)
A:
PF142521=DUF4347=FE(7.7=100)
C2:
PF142521=DUF4347=FE(16.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCATCTCCTCCAAGGTGCCAA
R:
TGGCCCCCTTGTGATAGATGT
Band lengths:
125-159
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types