DreEX0051769 @ danRer10
Exon Skipping
Gene
ENSDARG00000060025 | nsmfa
Description
NMDA receptor synaptonuclear signaling and neuronal migration factor a [Source:ZFIN;Acc:ZDB-GENE-091204-32]
Coordinates
chr21:13372605-13377155:-
Coord C1 exon
chr21:13377028-13377155
Coord A exon
chr21:13374421-13374504
Coord C2 exon
chr21:13372605-13372638
Length
84 bp
Sequences
Splice sites
3' ss Seq
TCTACAATTTGTATTTTCAGCTG
3' ss Score
7.66
5' ss Seq
TACGTAAGC
5' ss Score
5.9
Exon sequences
Seq C1 exon
GTGGAGAGCTGCAGGGCACCTGCTGCACCCCAGATGAGGCCAGATGTGAAGACATGGACTGGGAGGAGGAGAGAGAGATGGAGAGACTGGCCTGTGAGGGAGACGACTTTATCCCTCCCAAAATTATG
Seq A exon
CTGATCTCATCTAAAGTTCCCAAAGCCGAATATCTTCCCAACATCATCAAAAGAGACGATCCTTCTATTATCCCCATTCTCTAC
Seq C2 exon
GATCATGAGCATGCCACGTTTGATGATATTTTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000060025-'9-11,'9-10,10-11
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.314 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF142521=DUF4347=PU(1.4=4.7)
A:
PF142521=DUF4347=FE(19.1=100)
C2:
PF142521=DUF4347=FE(7.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGGAGAGCTGCAGGGCA
R:
AAATATCATCAAACGTGGCATGCT
Band lengths:
159-243
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]