MmuEX7000806 @ mm10
Exon Skipping
Gene
ENSMUSG00000006476 | Nsmf
Description
NMDA receptor synaptonuclear signaling and neuronal migration factor [Source:MGI Symbol;Acc:MGI:1861755]
Coordinates
chr2:25060139-25060725:+
Coord C1 exon
chr2:25060139-25060263
Coord A exon
chr2:25060479-25060562
Coord C2 exon
chr2:25060692-25060725
Length
84 bp
Sequences
Splice sites
3' ss Seq
GCTTTCCCCATCCCCTACAGCTC
3' ss Score
9.27
5' ss Seq
TACGTGAGT
5' ss Score
7.77
Exon sequences
Seq C1 exon
GCAGTGACCTACAGAGCTCACACTGCACCCTGGATGAGGCTTGTGAGGACCTGGACTGGGACACAGAGAAAGGTCTGGAGGCCATGGCCTGCAACACCGAGGGCTTCTTGCCACCCAAGGTCATG
Seq A exon
CTCATCTCCTCCAAGGTGCCAAAGGCCGAGTATATCCCTACTATCATCCGCAGAGATGACCCGTCCATCATTCCCATCCTCTAC
Seq C2 exon
GACCACGAGCATGCAACCTTCGAGGACATCCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000006476-'18-21,'18-19,26-21=AN
Average complexity
A_S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.087 A=0.044 C2=0.000
Domain overlap (PFAM):
C1:
PF142521=DUF4347=PU(1.4=4.7)
A:
PF142521=DUF4347=FE(19.7=100)
C2:
PF142521=DUF4347=FE(7.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGTGACCTACAGAGCTCAC
R:
CCAGGATGTCCTCGAAGGTTG
Band lengths:
159-243
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types